| SEMID package documentation. | SEMID-package SEMID |
| All ancestors of a collection of nodes | ancestors ancestors.LatentDigraph ancestors.LatentDigraphFixedOrder ancestors.MixedGraph |
| Determines which edges in a mixed graph are ancestralID-identifiable | ancestralID |
| Perform one iteration of ancestral identification. | ancestralIdentifyStep |
| Get bidirected components of a mixed graph | bidirectedComponents |
| All children of a collection of nodes. | children children.LatentDigraph children.LatentDigraphFixedOrder children.MixedGraph |
| Create an ancestral identification function. | createAncestralIdentifier |
| Create an edgewise identification function | createEdgewiseIdentifier |
| Create an htc identification function. | createHtcIdentifier |
| Create an identifier base case | createIdentifierBaseCase |
| Create a latent-factor half-trek critierion identification function. | createLFHtcIdentifier |
| Create an latent identifier base case | createLFIdentifierBaseCase |
| Identify bidirected edges if all directed edges are identified | createSimpleBiDirIdentifier |
| Helper function to create a flow graph. | createTrekFlowGraph createTrekFlowGraph.LatentDigraphFixedOrder |
| Create an trek separation identification function | createTrekSeparationIdentifier |
| Helper function to create a graph encoding trek reachable relationships. | createTrGraph createTrGraph.LatentDigraphFixedOrder |
| Get descendants of a collection of observed nodes | descendants descendants.LatentDigraph descendants.LatentDigraphFixedOrder descendants.MixedGraph |
| Determines which edges in a mixed graph are edgewiseID-identifiable | edgewiseID |
| Perform one iteration of edgewise identification. | edgewiseIdentifyStep |
| Determines which edges in a mixed graph are edgewiseID+TS identifiable | edgewiseTSID |
| Flow from one set of nodes to another. | flowBetween flowBetween.FlowGraph |
| Construct FlowGraph object | FlowGraph |
| A general generic identification algorithm template. | generalGenericID |
| Get getAncestors of nodes in a graph. | getAncestors |
| Get descendants of nodes in a graph. | getDescendants |
| Determines if a half-trek system exists in the mixed graph. | getHalfTrekSystem getHalfTrekSystem.MixedGraph getTrekSystem.MixedGraph |
| Size of largest HT system Y satisfying the HTC for a node v except perhaps having |getParents(v)| < |Y|. | getMaxFlow |
| Get the mixed component of a node in a mixed subgraph. | getMixedCompForNode |
| Get the corresponding mixed graph | getMixedGraph getMixedGraph.LatentDigraph |
| Get getParents of nodes in a graph. | getParents |
| Get getSiblings of nodes in a graph. | getSiblings |
| Determines if a trek system exists in the mixed graph. | getTrekSystem getTrekSystem.LatentDigraph getTrekSystem.LatentDigraphFixedOrder |
| Determines whether a mixed graph is globally identifiable. | globalID |
| Identifiability of linear structural equation models. | graphID |
| Determine generic identifiability of an acyclic mixed graph using ancestral decomposition. | graphID.ancestralID |
| Determine generic identifiability by Tian Decomposition and HTC | graphID.decompose |
| Determine generic identifiability of a mixed graph. | graphID.genericID |
| Determines if a mixed graph is HTC-identifiable. | graphID.htcID |
| Helper function to handle a graph component. | graphID.main |
| Check for generic infinite-to-one via the half-trek criterion. | graphID.nonHtcID |
| Determines which edges in a mixed graph are HTC-identifiable. | htcID |
| Perform one iteration of HTC identification. | htcIdentifyStep |
| Get all HTR nodes from a set of nodes in a graph. | htr |
| Half trek reachable nodes. | htrFrom htrFrom.MixedGraph |
| Get the induced subgraph on a collection of nodes | inducedSubgraph inducedSubgraph.LatentDigraph inducedSubgraph.MixedGraph |
| Are two nodes siblings? | isSibling isSibling.MixedGraph |
| Get directed adjacency matrix. | L L.LatentDigraph L.LatentDigraphFixedOrder L.MixedGraph |
| Construct a LatentDigraph object | LatentDigraph |
| Construct LatentDigraphFixedOrder object | LatentDigraphFixedOrder |
| Checks that a LatentDigraph has appropriate node numbering | latentDigraphHasSimpleNumbering |
| Get all latent nodes in the graph. | latentNodes latentNodes.LatentDigraph |
| Determines which edges in a latent digraph are LF-HTC-identifiable. | lfhtcID |
| Perform one iteration of latent-factor HTC identification. | lfhtcIdentifyStep |
| Construct MixedGraph object | MixedGraph |
| Checks that a MixedGraph has appropriate node numbering | mixedGraphHasSimpleNumbering |
| Get all nodes in the graph. | nodes nodes.MixedGraph |
| Number of latent nodes in the graph. | numLatents numLatents.LatentDigraph numLatents.LatentDigraphFixedOrder |
| Number of nodes in the graph. | numNodes numNodes.LatentDigraph numNodes.LatentDigraphFixedOrder numNodes.MixedGraph |
| Number of observed nodes in the graph. | numObserved numObserved.LatentDigraph numObserved.LatentDigraphFixedOrder |
| Get adjacency matrix for bidirected part. | O O.MixedGraph |
| Get all observed nodes in the graph. | observedNodes observedNodes.LatentDigraph |
| Get the observed parents on a collection of nodes | observedParents observedParents.LatentDigraph |
| All parents of a collection of nodes. | parents parents.LatentDigraph parents.LatentDigraphFixedOrder parents.MixedGraph |
| Plots the latent digraph | plot.LatentDigraph plot.MixedGraph |
| Plot a latent factor graph | plotLatentDigraph |
| Plot a mixed graph | plotMixedGraph |
| Prints a GenericIDResult object | print.GenericIDResult |
| Prints a LfhtcIDResult object | print.LfhtcIDResult |
| Prints a SEMIDResult object | print.SEMIDResult |
| Identifiability of linear structural equation models. | semID |
| All siblings of a collection of nodes | siblings siblings.MixedGraph |
| Strongly connected component | stronglyConnectedComponent stronglyConnectedComponent.LatentDigraph stronglyConnectedComponent.LatentDigraphFixedOrder stronglyConnectedComponent.MixedGraph |
| Returns all subsets of a certain size | subsetsOfSize |
| Returns the Tian c-component of a node | tianComponent tianComponent.MixedGraph |
| Performs the tian decomposition on the mixed graph | tianDecompose tianDecompose.MixedGraph |
| Identifies components in a tian decomposition | tianIdentifier |
| Globally identify the covariance matrix of a C-component | tianSigmaForComponent |
| Transforms a vector of node indices in the internal rep. into external numbering | toEx toEx.LatentDigraph toEx.MixedGraph |
| Transforms a vector of given node indices into their internal numbering | toIn toIn.LatentDigraph toIn.MixedGraph |
| Perform one iteration of trek separation identification. | trekSeparationIdentifyStep |
| Trek reachable nodes. | trFrom trFrom.LatentDigraph trFrom.LatentDigraphFixedOrder trFrom.MixedGraph |
| Update edge capacities. | updateEdgeCapacities updateEdgeCapacities.FlowGraph |
| Update vertex capacities. | updateVertexCapacities updateVertexCapacities.FlowGraph |
| A helper function to validate that latent nodes in a LatentDigraph are sources. | validateLatentNodesAreSources |
| A helper function to validate input matrices. | validateMatrices |
| A helper function to validate an input matrix. | validateMatrix |
| A helper function to validate if input nodes are valid. | validateNodes |
| A helper function to validate that there are no variable arguments | validateVarArgsEmpty |
